Department of Environmental Sciences
Huxley College of the Environment
Western Washington University
Bellingham, WA 98225- 9181

ESCI 433/533 Population Biology

Winter 2017
M 2-5pm OM 580
(many class meetings will be outside)

Instructor: John McLaughlin Teaching Assistant: Jesse Klinger
Office: ES 434 Office: ES 67
Phone: 650-7617
Office Hours: Mon 1-2, Fri 4-5, and by appt. Office Hours: by appointment
E-mail:   E-mail: jesse[dot]klinger[at]pcc[dot]edu
( Please do not send attachments in proprietary formats.)

Course Web Site: http://faculty.wwu.edu/jmcl/Popbiol/syl_2017.htm
http://larch.huxley.wwu.edu/Popbiol/syl_2017.htm

Text: (recommended) Gotelli, Nicholas J. 2008. A Primer of Ecology, 4th ed.
Additional readings as assigned.

Prerequisites: Ecology (ESCI 325 or BIOL 325),
Calculus (MATH 124; MATH 125 recommended),

Biostatistical Analysis (ESCI 340 or BIOL 340)

Course Description:

This course provides an examination of the structure, distribution, and dynamics of populations. Both empirical and theoretical approaches will be emphasized. Population biology is inherently quantitative; students will be expected to use mathematics to evaluate population concepts and to analyze population data. The course is structured as a series of research projects that investigate population concepts and evaluate predictions of population models. Class meetings will include brief presentations and discussions to introduce projects and their conceptual context. To complete the projects, students will collect data individually or in small groups, analyze data using population models, and present project results in scientific paper format. Students are encouraged to collaborate on data analysis, but individual project reports are required. One project will consist of numerical population simulations instead of field study. Students will design and conduct the final project independently, as individuals or in pairs. Please submit a brief description of your project idea to the instructor at least a week before you start.

On completion of the course, students should be able to apply information about populations to (1) describe how various factors influence their dynamics, (2) determine effects of age structure and spatial structure on population growth and persistence, (3) predict effectiveness of programs for population conservation and management, (4) design and conduct a population research project, and (5) communicate population research results in written, graphical, and oral formats.

Course Evaluation:

Grades will be based on written reports about five projects and an in-class presentation on the independent research project. Contributions of each report and the presentation to the final course grade are listed in the assignment schedule below. You may select among projects for two of the reports, as outlined in the assignment schedule. The first two reports may be informal. The last three must follow the standard format of a scientific research article, which will be reviewed using corresponding criteria, reduced for projects 3-7 and complete for the independent project.

For advice on scientific writing, see notes on writing from Jesse.
For suggestions on effective editing, click here.

Course Schedule:
Date Topics Reading 
Jan. 4 Basic population concepts
Understanding complex behaviors
Group cohesion
Individual foragers
Project 1
Ehrlich 1994
Gotelli, appendix
Jan. 11 Age-structured populations
matrix example 1, matrix example 2
Project 2
Gotelli, ch. 3
Daily et al. 1994
Jan. 18 Forest structure and dynamics
Forest transition matrix example
Project 3
Gotelli, ch. 3
Jan. 25 Meet at Arboretum, East of CF
Species-area relationships
Project 4
Preparation for Project 6: Spatially structured populations
Numerical example: 3-patch metapopulation matrix calculations
Gotelli, ch. 7
Gotelli, ch.4
Hanski & Ovaskainen 2000
Feb. 1 Meet in CF 167 computer lab
Population Viability Analysis for conservation planning
PVA for WA wolves, background
Introduction to R computing environment
(Computer lab: simulation modeling)
Example: PVA simulations with age structure, in R
Functions to run PVA, with age structure
Project 5
Traill et al. 2010
Carroll et al. 2006
Wiles et al. 2011, Appdx G-H
Feb. 8 Field trip to project 6 study area
Chuckanut Community Forest; meet off campus, 2:20 pm
24th St. x Old Fairhaven Parkway (Veterinary Hospital)
Map to meeting location
Project 6: Spatially structured populations
Gotelli, ch.4
Hanski & Ovaskainen 2000
Feb. 15 Independent project plans due
Disturbance and species diversity
Project 7
Link to Bellingham tidal information
Bruno et al. 2003
Feb. 22 Independent projects
March 1 Independent projects
March 8 Independent project presentations

Assignments

Project reports are due at 2pm on the date listed.

Project Report

Due Date

Weight

One Jan. 18 10%
Two Jan. 25 10%
Three or Four Feb. 8 25%
Five, Six, or Seven Feb. 22 25%
Project presentation March 8 10%
Independent project report March 8 20%

Reading:

Bruno JF, Stachowicz JJ, Bertness MD. 2003. Inclusion of facilitation into ecological theory. Tr.Ecol.Evol. 18:119-125.

Carroll C, Phillips MK, Lopez-Gonzalez CA, Schumaker NH. 2006. Defining recovery goals and strategies for endangered species: The wolf as a case study. BioScience 56:25-37.

Daily GC, Ehrlich AH, Ehrlich PR. 1994. Optimum human population size. Population and Environment 15:469-475.

Ehrlich, PR. 1994. Enhancing the status of population biology. Tr. Ecol. Evol. 9(4)15.

Hanski I, Ovaskainen O. 2000. The metapopulation capacity of a fragmented landscape. Nature 404:755-858.

North Cascades Ecosystem Grizzly EIS Scoping

Pease CM and DJ Mattson. 1999. Demography of the Yellowstone Grizzly bears. Ecology 80: 957-975.

Romain-Bondi KA, et al. 2004. Density and population size estimates for North Cascades grizzly bears using DNA hair-sampling techniques. Biol.Conserv. 117:417-428.

Traill LW, Brook BW, Frankham RR, Bradshaw CJA. 2010. Pragmatic population viability targets in a rapidly changing world. Biol.Cons. 143:28-34.

Wiles GJ, Allen HL, Hayes GE. 2011. Wolf conservation and management plan for Washington. Washington Department of Fish and Wildlife, Olympia, Washington. 297pp.
[online] http://wdfw.wa.gov/publications/00001/



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